When the evil Yo-Kai Kin, Gin and Bronzlow makes the Yo-Kai Watch disappear from time so they can help Dame Dedtime prevent humans and Yo-Kai from being friends, Nate Adams finds help in the Yo-Kai Hovernyan, who takes Nate, Whisper and Jibanyan 60 years to the past, when the Yo-Kai Watch was first invented by Nate's grandfather, Nathaniel Adams, while he was a boy. Together, the 2 boys fight Dame Dedtime and her evil Wicked Yo-Kai minions to save the world from her evil plans.

Upon receiving a message from an old friend’s daughter, Goro arrives in Paris and learns of the elderly man’s wish to taste a particular soup he had in his childhood before he dies. Deciding to help, Goro sets out on a quest to find this mysterious soup, traveling through Japan, braving a storm, and even ending up in South Korea.

Onuki asks people in a hospital to perform a play for Paco, who suffers from memory disorder. His only hope is to help Paco survive from her illness.

Kagerota is a young ninja who embarks on his first mission: stealing the goldfish from a wealthy samurai. He succeeds, but then a mysterious fat cat starts following him. His distinctive red nose leads Kagerota to believe that the feline stalker is actually the reincarnation of his long last father, a legendary ninja who left him when he was ten years old.