Morioh, 1999—a normally quiet and peaceful town has recently become a hotbed of strange activity. Jōtarō Kūjō, now a marine biologist, heads to the mysterious town to meet Jōsuke Higashikata. While the two may seem like strangers at first, Jōsuke is actually the illegitimate child of Jōtarō's grandfather, Joseph Joestar. When they meet, Jōtarō realizes that he may have more in common with Jōsuke than just a blood relation. Along with the mild-mannered Kōichi Hirose and the boisterous Okuyasu Nijimura, the group dedicates themselves to investigating recent disappearances and other suspicious occurrences within Morioh. Aided by the power of Stands, the four men will encounter danger at every street corner, as it is up to them to unravel the town's secrets, before another occurs.

Set during the Edo Period, a young man from a noble family meets a young woman under a special tree called "Raiou" (the tree was struck by lightning at one time with the broken part eventually sprouting out cherry blossoms). The young woman lived freely in the mountains after she was abducted as a young child. The couple soon fall in love under the Raiou tree, but become acutely aware of their different social positions & the ramifications it has on their relationship.

1989: 64th and last year of the Showa era. A girl is kidnapped and killed. The unsolved case is called Case 64 ('rokuyon'). 2002: Yoshinobu Mikami, who was the detective in charge of the Case 64, moves as a Public Relations Officer in the Police Affairs Department. His relation with the reporters is conflicted and his own daughter is missing. The statute of limitations for the Case 64 will expire in one year. Then a kidnapping case, similar to the Case 64, takes place. The rift between the criminal investigation department and police administration department deepens. Mikami challenges the case as a public relations secretary.

1989: 64th and last year of the Showa era. A girl is kidnapped and killed. The unsolved case is called Case 64 ('rokuyon'). 2002: Yoshinobu Mikami, who was the detective in charge of the Case 64, moves as a Public Relations Officer in the Police Affairs Department. His relation with the reporters is conflicted and his own daughter is missing. The statute of limitations for the Case 64 will expire in one year. Then a kidnapping case, similar to the Case 64, takes place. The rift between the criminal investigation department and police administration department deepens. Mikami challenges the case as a public relations secretary.

Kazu works at "Funiculi Funicula" cafe. There is a mysterious rumour that if a customer takes a specific seat at the cafe, that customer can travel back to a time of their choice.

"Girls" follows four beautiful women and depicts the troubles found in their love lives and work place. Yukiko Takigawa (Karina) works at a big advertising firm and has a good looking boyfriend. Seiko Takeda is married and has no children. She works at a large real estate company. Yoko Kosaka is a single woman working at a historic stationary company. Takako Hirai is a single mother who works for a car manufacturer.

Kyo Otsuka is a shy high school student with zero confidence but he has feelings for Naoko Miki, the most popular girl in his class. Instead of putting himself forward, he watches her from afar as she hangs out with her energetic friends. This includes Hirofumi, Miki’s childhood friend and Kyo’s friend. Hirofumi is handsome and athletic and has a nice personality. When another shy student stops going to school, the feelings of everyone begin to change.

After failing his university entrance exam, Yuki Hirano sets his eyes on the role of a forestry trainee. Setting off for training he doubts his decision many times, but eventually after passing the training course, he is sent to Kamusari Village for a year of work experience - where he becomes assimilated with the beauty of nature and the warm-hearted people of the village.